FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences729641
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATTGT4400.00445102211.5027141
TCAAATT9753.3464494E-710.3313862
CTTGTCT6709.0829475E-49.7123131
CTCCGAA6900.00118888039.4307971
CTACATT6350.0063752659.1090111
ATCAAAT11703.7506052E-68.6516141
CAAGAAC9904.2030227E-48.0336411
CATTTAC8100.0053493027.98904665
CTTCATT12055.063964E-57.80029871
CTTTTAA11250.00164295947.06960441
ATTTCAT16909.409368E-66.84523251
CTTTGAT13250.0090931386.0024941
CTTCTTT23706.1047667E-65.7964251
TTTTTAA18350.00146121675.48641876
Produced by FastQC (version 0.11.5)