FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences890588
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCTCC2750.002738801515.726598
AGTAGAC2850.003473303315.17563154
CTTACCC4252.2867549E-413.5680398
CTCAAAT6254.7780052E-410.4158071
AATTACA7900.0041789378.2116697
TTCATGT10000.00422980037.2084253
CTCCGCC16959.7839475E-66.8277981
CTTTGAT14053.3516996E-46.692641
CAAAGAA17601.2031097E-46.1646581
Produced by FastQC (version 0.11.5)