FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1426248
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTGG8200.0055585187.95604471
CGACAGA8500.0076705887.67524341
GTTGAAT12255.0458015E-47.1009061
GTTTGAT16605.219312E-56.55015751
ACGTTTT13500.00159889066.4156294
CAAACAC12650.00548538756.30334041
CTTTTAA16954.8158868E-45.98724371
CAAGAAA25401.8809E-55.4223621
TTGAATT20057.241424E-45.40196042
CAAACAA19600.00303222245.1777441
CTCAAAA18650.009595735.05281161
Produced by FastQC (version 0.11.5)