FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1010553
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAAGGG6550.0097713838.6471612
CTTCGGA11302.4511284E-47.5607461
AACATTA8450.009047137.53434045
CGCTCAT11954.6627878E-47.1494921
CTTTTGT14254.8289337E-46.4951671
TTTCGGG13050.0097387735.9632717
CTGAAAT14750.00501442375.79231
TTCCGTC15350.00834086355.53173269
CTTCCTT21200.00183432865.0375251
Produced by FastQC (version 0.11.5)