FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538360
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTGAGC4350.00414055211.6137676
CTCGAAG4550.00531434311.2315791
GTAAACA4600.00627537710.98360352
CTTTAAT6003.0036425E-410.9507891
GACAATC4700.007363007410.749912
CACAAAG5900.00320807179.8990191
CTTTGAT8608.4519363E-48.4889841
CTTTTTC18850.00169245715.4221421
Produced by FastQC (version 0.11.5)