FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences972367
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGAGAT4650.00709294710.80555253
CTTGAAT9900.00385347247.2778071
CTTATTT17451.12900976E-46.19343421
GTTAAAA12850.00687069176.16772941
AATATGA18853.419772E-45.71044735
CTTCCAT18250.00133240545.5271451
CAAAAAG27552.468605E-65.4920371
CTTTTGT17550.0050550945.3370581
Produced by FastQC (version 0.11.5)