FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1175739
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTCAT6400.00675396349.0460861
GTCAGGG7500.00252117478.6842431
CCTCGCT8659.786936E-48.36632251
CCCGCCT10508.656061E-58.2707081
GGTTTGA7900.0040330668.24453451
TTATCAC11753.3513477E-47.35847045
CTTTCAT17708.549513E-45.72407771
GGATATT19700.00348240745.1204254
Produced by FastQC (version 0.11.5)