FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569851
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGAT3252.3296017E-517.727941
CTTTAGT2950.00439203614.6480871
ATTAAGA4755.883738E-412.1296441
CAGTTCT5450.00197707310.4937773
AATTTAC5650.002667132310.1223155
CTTTATT10751.2532073E-69.3793171
CTCAAAG6350.0065802629.0733561
TGATAAG7850.004245898.1961754
AAGATTT11402.9141402E-58.1522383
CTTTTGT9650.00300930047.46318771
TTCATTT13200.009793745.95897342
CAAAGAA15550.0079033135.5577951
Produced by FastQC (version 0.11.5)