FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences872297
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCACT3100.006610979313.7734261
TTATAAC6608.007628E-510.735232
TACGTCC4800.0099209310.3273283
CTTTGAT11905.285082E-57.7740771
CACGCTT8450.0089573847.5425293
AAATAAG9800.0041297647.22611865
GATTGCA10200.00609238736.9427426
CAAAGAT12356.827812E-46.91459471
CTTGAAA14003.914289E-46.6079651
CCCGCAG12250.004751986.390121
TTTTGCG12450.00591831336.2568327
AAAGATT13050.0095852925.97224332
CTTTTTT21200.00184492215.0350971
Produced by FastQC (version 0.11.5)