FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1268280
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTGC4700.006748177610.87865451
CTATCCT6350.00586856449.2021911
CTCCGCT8709.454022E-48.3956781
CTCAAAC10054.4349793E-47.994691
CTTGTAA14003.608925E-57.3042391
TTGATCC10000.0042135617.21179153
CCCAGAT11500.00186391926.98666331
CTTTGAT25601.5024852E-96.8477241
CTTCGAT11900.00267229146.75181771
CAAAGAG16400.00192827655.7899451
CTCAAAA16550.00214929135.73746871
TGATACC15450.0072701795.60139134
GAATGAT18550.00137862715.51263331
AAAATAC30354.4669105E-75.46463165
AAGAGAT20600.0010568535.25130463
CTTTTAC22404.8255431E-45.2173141
CTTTGAA22555.302611E-45.18260861
Produced by FastQC (version 0.11.5)