FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences818646
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAGT3204.6748092E-415.5127261
CTCACCA4650.00775882210.6754241
CTCCCGT5600.002650838310.1307591
CTGCGAG5850.00380564579.6978211
CCAAAAC7553.0832904E-49.3927561
CTTTACT7450.0028498088.5669511
CTTCGAT8750.00133934938.1046081
CTTTGAC10600.00107376597.35913661
CTTTTAT16408.040672E-66.9185671
CGATCTT10250.00630079546.9185671
CTTTAAT10550.0083282066.72183131
TCAGCTT14901.2834735E-46.6306212
CAAAGAT12750.00746634236.1181841
CTTTTTA16750.00351477325.5038751
Produced by FastQC (version 0.11.5)