FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2764918
Sequences flagged as poor quality0
Sequence length100-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCACAT13854.0132873E-67.86356161
CCCCAAT9500.00239083947.642831
CCCGTAA10000.0039485427.26068831
CGCTCGT10950.0095156536.6307661
GTTTAAT30203.539244E-75.5296641
CTCCAGC23802.2172247E-45.18620631
CTTAAAA41301.1343218E-85.09830431
Produced by FastQC (version 0.11.5)