FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1222719
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCCAC6507.812987E-49.8742391
CCCGCTT8751.2852834E-48.9651821
TTGATCG6450.0084548248.8017333
GTTACTT8307.5143616E-48.5920421
CTCAAAT9152.0875945E-48.5732621
CTCCGGA9703.9191486E-48.087151
CTCGCCA11400.00218832756.88117071
CCTTCGC11450.00229159356.85112141
GTTCAAG14200.00322643396.02653071
CCTGCAT19907.731919E-45.3754231
CTCCTTT22751.4732567E-45.32895471
CTTTGAA19350.00316631755.15966561
CTCGTCG18000.0076748965.1504521
Produced by FastQC (version 0.11.5)