FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1801117
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGGA5100.001049531211.3236481
CTTAAAG12408.398749E-68.1502881
CTCCAGT11050.0013845757.18616151
GATTGAC13452.0740551E-46.96141965
CAACGGA17201.2547665E-56.71518661
CTCAAAT13100.00113622336.6126651
CTTTAAG12600.00549813646.302151
CCCTGAT18453.5163874E-56.26022861
CTCAAAG19055.605157E-56.06305551
CTTAAAA22501.689465E-55.77506071
CTTCAAG22551.07551044E-45.44213061
CTTTTGG22701.18844095E-45.40616941
CTTCAAA29901.8979899E-65.31151061
CAATAAT27251.1503753E-55.2982211
Produced by FastQC (version 0.11.5)