FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1389852
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTGAGT7400.00243016648.7197521
CTTCGAT14751.4016623E-67.77716451
TCACGTT9400.0025612027.5887929
CCCTTGC13550.00179705286.34943771
CTCTCCG13750.00211910936.25708251
CCATCCA16504.188603E-46.0526364
CCTCGAT13050.0084911796.04331871
CCCAGCG15300.00696623745.62319561
CTTCTGA15700.0092571245.4799291
CTTGAAA22651.2732779E-45.3811371
CTTCGGG17450.00501375.34122941
CATCCAT19150.00260182145.24146371
CAATGAT18300.0087472545.09313961
CCCGCAG19900.00420202835.0439211
Produced by FastQC (version 0.11.5)