FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences680796
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGATT3800.001981487312.8148364
CCTCGAA5903.955312E-410.6305411
GTTCAAT5600.00306207389.9555851
CCCCCCC1250.0076918398.90474220-24
GTTTCTC6450.0097974368.6436091
CCAGCTT9504.006827E-48.0692641
CTTCCAG9700.00436614457.1844431
Produced by FastQC (version 0.11.5)