FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1231709
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAC9502.7080474E-48.3693861
CCTCCAC12959.819358E-46.69785831
CTTTATG14705.8658654E-46.39220241
CCTCCAG14856.633331E-46.3276351
CTCCGGA12700.0058864296.2605641
CTCCAAA12750.00613178836.2360131
CTGATCC14050.00246393666.1734711
CCTTGAT18200.00746120055.16293241
CAAGAAT18450.0087481185.0929741
CCTGCAT20200.0045727255.0095781
Produced by FastQC (version 0.11.5)