FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548834
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATTGG2900.003686108615.0391251
CCCAGAT3800.001423080713.3900991
CTTCGGT4150.002759864612.2608131
CTTCGAT5450.001720965810.669961
CTTTCGG7201.4890835E-410.0957091
CTCAAAG5800.002886615510.0260841
CCCAAAA6200.00500887639.3792391
CAAAGAG7200.00166837959.0861381
CTTGTAT6500.0073867158.9463511
TTCCTTG10600.00734743766.80872152
CTTTTAT15750.00125538555.9997361
CAATATT13300.00963940755.9680634
TTTATAT20409.1679447E-45.30583053
Produced by FastQC (version 0.11.5)