FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences790737
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACTAG1000.00636325128.7248368
CTTACAA7702.2426793E-611.2562711
CTTCGAT6200.0052829629.3197081
CTTAAAT9800.00340540247.37017731
CTTCAAC10850.00113193327.32262751
CTTCAAA16355.8501955E-67.06815861
CTTCCTT15401.9236137E-57.03516961
AATCTTG10400.00641726386.90544465
CTTCAAT13250.00128193766.541381
CTTTTAT19700.00337301825.13293551
ATTTTGT18400.0091174735.07432176
Produced by FastQC (version 0.11.5)