FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578856
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTCCG4250.003728368811.7781372
CCCGTTT4958.67752E-411.5812331
TTAACTT4500.00577017211.1084234
CCTCGGT4800.0090822810.45025351
ATTGTCA6150.00542353059.2892748
CTTCCAA6450.007795628.8879241
CCAAAAA8450.008050677.63230661
CTTTTCT15000.00561231845.73271041
Produced by FastQC (version 0.11.5)