FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1479752
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAT7800.0037051488.3226911
CTCACGA8600.0089017157.5484871
CTCCCAT10608.974288E-47.4851881
CTCAACG13150.00119680786.5822051
CTCCAAA13500.00161049246.4115551
CTTGATT14756.2719575E-46.357221
CCCATTT12800.00652855776.19867131
TTTGATT18101.9369404E-45.9547882
GTTTTAT16450.00232331625.7002421
CAAAGAT19304.3969625E-45.6059581
CTCTGCT15600.00807486855.5484611
CAAAAGA22651.1629587E-45.413731
ATTTCGC17250.0042912685.4123736
AGGATTT21300.00174167195.05777843
Produced by FastQC (version 0.11.5)