FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1723554
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCACAA9051.560926E-48.8068081
CCCTGAT15954.6991954E-77.72258571
CTTCCCT13502.4828481E-57.5139581
ACGATTT19201.7410275E-77.13017943
CTCTGAA13301.6788505E-47.08216761
CTCATAC11900.00290996676.6976161
TACCGTC15852.2006969E-46.36239779
CCTAAAA12600.00528992766.32552581
CTCCAAT15150.00556110175.7390911
CTTTGGT22208.029887E-55.54843431
CTTCGAT18450.00142679345.4980181
CATTGAT33207.652852E-85.4560261
GTATTGC19250.00262070825.238656
CTTCCAC25159.356768E-55.18571951
Produced by FastQC (version 0.11.5)