FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570295
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGAGAT3000.004621283614.5363241
CCTGAAT6656.663865E-510.9295661
CTCCAAC5450.001722629410.6688611
CTTCCGT7350.00201479838.899791
CTTTTAT13051.6808281E-68.3542091
CTTTAAT8800.00110966788.25927451
CCTTTGT8050.0045882688.12589551
Produced by FastQC (version 0.11.5)