FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1122651
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC4452.1093356E-514.5496958
CACGTCT4452.1093356E-514.5496959
CACACGT4552.6024562E-514.2292877
CCCAAAT7451.9030509E-510.6705181
GCACACG6557.744445E-49.8835866
AGCACAC7850.0040227668.2468145
GAGCACA7850.0040227668.2468144
AGAGCAC8000.00477058868.0921863
CCCGTGA8050.00483725138.0797081
GTTCAAG11502.5267366E-47.54106141
CTTTAAT12758.241657E-46.8017411
CTTAAAA11750.00261514736.7655621
CGATTTT13850.0022148796.23224934
CTGGAAT13100.0081325426.06834751
CTTCCGG24606.865669E-55.2879391
CAAAAAT19150.0023533945.2833371
GATATTC23301.8516889E-45.24815135
Produced by FastQC (version 0.11.5)