FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1144392
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTTAGT6405.9235474E-410.1761161
CTTCAAT17502.077917E-67.0295961
ATAGATT12456.572565E-46.93822432
CTGAAAG21101.1431803E-76.85909841
TAATTAA10550.0072128296.82313545
CCACAAT10750.0082195096.7314871
AATGCCC10900.0098826676.6040437
CTTTCAT21851.5130536E-66.2924771
CTTTGAC14650.00388175625.9273851
CTTTTAC19203.9202874E-45.6533971
ATTTCAG19000.00224058265.30408956
CTGCAAT18250.00760076335.15465931
Produced by FastQC (version 0.11.5)