FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1371426
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGCTA2850.00342647215.2074431
CTTGCAC7750.00345000768.3886221
TTAATCT9653.4191165E-48.1905443
CATTAAT9050.00155886247.9818071
CTCAAAA16459.5780706E-87.9041731
CTCAGGA11652.9507576E-47.44055181
CTCCCTG13001.3153827E-47.2235351
GTATTGG13050.0059845436.955879145
CTTCGAT17101.1391339E-56.75886341
CTTTAAT14203.8829172E-46.6130961
CTTGAAA23401.1215707E-76.482661
CCAAAAT13500.00158394236.4209211
TATTACA14605.814713E-46.3969737
ATTGAAT16754.3245955E-46.03758141
CTTTCAA23856.9289526E-65.75459861
CTTTGAT19454.7850647E-45.570851
CTTTTCT26707.955607E-65.41088771
CCATTTT21703.8930395E-45.29717454
TTCTGGA27401.3656063E-55.2459222
ATCGGAA19500.00297122265.1861281
Produced by FastQC (version 0.11.5)