FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4865216
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCACGT14851.0948628E-57.32563921
CTTAAAT44250.07.04751351
CTCACGA18858.7448643E-76.9253521
CTCAGCT27551.72804E-106.8443531
CCCTAAT10650.0073612286.80974861
CTTCAAT73400.06.52121641
CTTTATT95950.06.42472651
CTCACAC13700.00179010446.3524521
CTCAAGA39151.8189894E-126.1131191
CTCCAAT39403.6379788E-126.0743311
CTTTCGT42350.05.99370431
CCCAAGC25706.080918E-75.9260711
CTATAAT54200.05.88754271
CCCACAC21003.4078403E-55.87097641
GTTAGAA19809.185617E-55.8605111
CTCACTC16250.00188496485.8019061
CCCAGGG20251.270026E-45.73027751
CTCATTT47500.05.64922431
CCCACAT27051.5717869E-65.6303161
CTCCAGA41658.185452E-115.57205871
Produced by FastQC (version 0.11.5)