FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1268224
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCGCG6658.722908E-49.7564171
CTCACGC6500.0079182128.8725021
CACACGG7550.00277353178.5934011
CTAAAAT12801.4390607E-68.447941
CTTTGAC14257.6612196E-78.09421351
CACAGAT13101.4819656E-47.1538781
CACAAAG14456.510809E-56.98441031
CTCCGGT11950.00320559376.63581471
CATAAAT18303.180555E-56.30287081
CTCCCGG16250.00202127945.76712661
GTTTATT15600.0081229775.54531431
CCTTTGT15700.0087149465.50999361
CTTTAAT17250.00410336955.43280031
CAAGAAT20308.733849E-45.32677941
CCTCCTT17600.00519786735.3247621
Produced by FastQC (version 0.11.5)