FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences866248
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACTAAC1850.00537874219.3795571
CTAATAT4705.590294E-412.2049981
CCCAAAT6003.552059E-410.7556541
GTCTGAC4850.0097674110.3490831
TGCAATC8700.00118777578.2037982
CAAGGAT10609.546588E-47.44101861
CTGCAAT13603.136428E-57.3813321
CTTTTGA14650.0042946715.8733951
CGTGAGC3900.00340204365.13091625-29
Produced by FastQC (version 0.11.5)