FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1476273
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTTTGC11900.00298693686.68083336
CACCAAT12450.00452137556.42136531
CTCCAGA15800.00131130175.9798511
ATCGGCT14550.0036481575.9607816
CCGGAAT24701.8085884E-65.88487341
CTTCAAG17758.398829E-45.7323631
CTTGATT15800.0085475915.5198621
TAGATTT15750.0087568735.50774573
CAAAGAT23201.4885137E-45.32555681
AGATCAT20409.016448E-45.3142994
CTTTAAT22254.7121302E-45.22629641
CTTTTGG18200.0070013255.1912991
CAATTAT18650.0093089455.06603961
CTGCAAT27456.517939E-55.0305481
Produced by FastQC (version 0.11.5)