FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1359792
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAGGT200.00478108730.45827140-144
CCCCCCC1850.0011506698.231964140-144
CTTCTAT14154.8412214E-57.14359241
CTTCAAC16053.4528042E-56.7477861
TTGGCTG11900.00312162826.6527197
CCCAAAA14304.2535673E-46.5637551
CCTTCAC15007.593029E-46.2574471
GTCATTG13000.00758789856.10934161
CTTATCT14800.0044594565.854161
CTTTAAA17507.6218246E-45.7761051
CTTCCAC16400.00221405325.7232741
CAAAGAG17708.809048E-45.7108381
CTCCGGA15200.0059946195.70010331
CTTTGTA15300.0066590315.64618544
CTTTGAT22158.1785714E-55.54140951
CAAAGAT21653.5107275E-45.3358931
CAAAAAG33152.5041663E-65.00944231
Produced by FastQC (version 0.11.5)