FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1368918
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACCC6150.00493000739.39917858
CTCTGGT6500.00703428139.001571
CGAAAGG10500.0059070946.96550041
CTTAAAG13600.0014964136.45333151
GTTTGAT13950.00199256166.291421
GTTTTAC14050.00215915436.24664071
GTTTTTA18853.970469E-56.2079791
CTTTTAC17205.181982E-45.9530731
CCCAGCT14850.00401148255.91012141
CTTTCAG20601.4357475E-45.68060261
ATTTGCC15800.0091118165.4878126
CGAAAAT16050.0094764395.46824361
TCAAATT19150.0023565675.28301572
TTTTACC19450.00286310755.20152952
Produced by FastQC (version 0.11.5)