FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2432896
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTCAGA8350.0066405757.80030731
CAAGTGA11903.690905E-47.29776531
CTCAAAT17401.4351588E-56.6546681
CTTCGAG13300.00131162556.529581
CTCAGGA12450.00472972456.39409351
CTCCCAT16754.2277816E-46.04879471
CCCATGC21709.059484E-66.0030011
CATCGAT21003.5166522E-55.85848431
CTTTAAT37651.2423698E-95.57427841
CCACACC21452.9812288E-45.39819241
CCCGAAG18850.00189957245.37492371
CCCAGAA20750.00111307665.2315311
CCACAAG18150.0071314685.1834911
CCTGGAT21150.00143503185.132591
CTTACAA19800.00351666575.1170361
CCTGAAT29951.04902265E-55.0743231
CCACCAT30051.1141543E-55.0574371
CCTCAAT21550.00183957495.03732061
Produced by FastQC (version 0.11.5)