FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1156093
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC3200.007383012713.5460118
CTCAAAT10256.5334843E-69.1810981
ACTCTTA6400.00683935649.0322375
CTTCGAA8850.00122376528.1795961
CTTATCC12657.393496E-46.86698061
CGAAGAC10800.0085664746.70272451
CTCCAAC12400.0045173136.42164231
CTTGAAA21256.404489E-66.13180971
TTAATAT16653.9861933E-46.0757393
TTTAATA18252.0079614E-45.93874842
CTCAAAA14850.0044962235.84965041
CTTTTAA15300.00626057855.67760131
CTTTGAT18000.0064419245.22812461
CTCTATC19900.0037257345.09272341
Produced by FastQC (version 0.11.5)