FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences934684
Sequences flagged as poor quality0
Sequence length100-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT2608.633511E-519.350527
CACGTCT3453.9624872E-516.6662839
ACACGTC3901.1293644E-414.7432528
AGCACAC5500.002042135710.4543055
GCACACG6456.770979E-410.0288396
GAGCACA5750.00294830910.001914
GAGAATG10000.0043436657.18887333
CTGAAAA20750.00112869865.22501331
Produced by FastQC (version 0.11.5)