FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences875477
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAAG7051.02548165E-511.2821541
CTCAACG5200.001216447711.1243631
CCTCGGT6200.0052356119.330111
GTCATAT8700.0010441568.3113051
GACCGCC10206.1130343E-47.7583229
CACCAAA9950.0039078797.2671711
CACAAAA13953.9282466E-57.2567521
ATATTGC14658.0004014E-56.8748896
CTTTAAT12758.184089E-46.8054921
CTTTCTC14053.3648554E-46.6904521
CTTCCAC12500.004966376.36313531
CTTCAAA16000.00161806725.8750541
CTGTTCC14900.00472216035.8234921
GATTTTG16800.00307288495.56684735
AAATTTA17250.00419678355.4219354
CTGCTTT19800.00354476345.1127121
Produced by FastQC (version 0.11.5)