FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences855575
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTAAGA2600.001862107416.6618821
TGGTCAC5700.005399989411.208205145
GTTGAAT8105.20625E-48.9137641
CTGCAAG12206.0152444E-57.69360161
CCTCCGC9950.0039644137.2564311
CTTTGAT12004.16346E-47.22014951
CAAGGAA14650.00397660355.91411541
CTTCCAG14800.0044539345.85417561
CAAAAAT18350.0013896735.50856071
Produced by FastQC (version 0.11.5)