FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536213
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGGCA2950.004811664614.44800953
TTAGGAA3950.006141087513.92517145
CTTTACT5800.00331043179.8615321
CTTCAAT8751.163926E-59.8051811
TTACAAG6100.00529879949.3153349
GGTAAAT6500.0084592228.79952051
CACAAAA7900.0044907388.1451251
CAGAAGC8050.00531868787.99335341
CTTTGAA8350.0073843577.70616671
ATCAAAT10600.0080463226.7449161
CTTTTCT13400.00163038386.40263651
TTTGATA13650.002149896.2472572
Produced by FastQC (version 0.11.5)