FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1043923
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTAAGT4800.00829387510.5803441
CTAAAAT7602.621996E-49.5461761
CGTATAT8150.00521831178.011761
CTTCTCT10558.01391E-47.56455231
CCTCAAG13251.5751424E-47.11820551
CGCATAT10350.0055525077.00975281
CTCAAAA12808.241294E-46.80165051
AGACCGA10800.0087678456.68646864
CAAAGGA12700.00566065266.28393941
CTCCGCA14050.00236206856.1965211
GAATACG13250.0092185845.9951136
CTTCCGG23052.2908964E-55.66558271
GGAAGAT16850.00288151415.59740161
CTCCGGA16900.00298451985.5808411
CCTTGAT15650.0078391515.5630111
CTTTCTT19850.0035106895.11694241
Produced by FastQC (version 0.11.5)