FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1049366
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAATTA3000.00497899414.37562753
ACCCGCG4600.006479614410.9379786
AACCACC6900.00125569.3754096
CTGTAAG8500.008005377.6382871
AATTGCC10300.00579898156.97846037
CATTTAT13500.0016068556.4123891
GTTTATT13850.00214350926.25034331
CTTTCAA19103.808175E-45.6653961
ATTCTTC24959.340493E-55.1855976
CAGAAAT19600.003217775.15281251
CTTCCAG21450.00180033385.04471161
Produced by FastQC (version 0.11.5)