FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484143
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCACAG2303.0332725E-522.162111
CTTAAAG4602.565935E-514.247071
CTTCTAT5551.4908134E-411.8083821
CTTAAAA6606.0501054E-511.0330851
CGATAAT6556.903972E-410.0055761
ATTTTCG6600.0088956038.7453336
CTTCAAG7800.00339203848.4021191
TTTTATT16100.00178442085.8256952
Produced by FastQC (version 0.11.5)