FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1594791
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATGCAT9502.6445245E-48.388181
CACGCAT10751.12573965E-48.0867011
GGCAGTA10055.108829E-47.89034279
CAACAGT11800.00266767536.75319531
CACAGAT12300.0041212486.4786751
CATTGAT21557.95423E-66.0509541
CTTTAAT21658.573414E-66.02300451
CATAAAC15050.0051767725.77621561
CTTTCAA25403.14514E-65.7042021
CCTCAAG15350.00644149725.6633251
AGCCATT17150.00382765645.4651612
AAAGAGT17500.0048564765.3558583
CCAATAT17900.0059868535.26125051
CATTCAA17900.0059868535.26125051
ATTTCCC18050.00699131145.19200856
CCTCGAT19550.0029606365.18776041
CTCCATG18250.0075091815.160351
CCTTGAT26754.493052E-55.145511
CTTTGAT25751.3580892E-45.0640021
Produced by FastQC (version 0.11.5)