FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences891696
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGAAT6305.8634137E-410.186891
CTCAGCG5800.00338707829.8356181
TCCAGTA5850.00379692679.7006987
CTCCGCC9550.00299903777.46683031
CAAAGAT15600.00141195235.9423531
CTTTCTT23353.707115E-55.4969941
CTTTCCG17300.00482170245.3584221
CTTTTCT19600.00371576645.09344531
Produced by FastQC (version 0.11.5)