FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1043150
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG650.00815820113.34425260-64
CCCACTC4100.002557789212.3875131
CCCAAAT5902.7268284E-411.0677791
CCCTCCT4700.00709069710.8061281
CTCCTAA4750.007670358810.692381
CTATAAT11101.6692138E-79.8047891
CCCAAAA9652.943818E-69.7743071
CTTAATT7100.00149596279.1971671
CTCAAAT11553.0109895E-68.7945981
CTTGTAT9452.454469E-48.4456061
CTCCAAT7750.0033135398.4257921
CTTTAAT15152.0153675E-78.1415341
CTCAAGG10801.1658133E-48.0617151
CAACTAC8100.0049346588.0617151
CCTCCGT8150.00521540558.0122571
CTTAAAT10054.7631978E-47.94139051
CCAAGGA10105.023706E-47.90207621
CTTTATT20358.60382E-107.84383061
CTCATAT10306.1981485E-47.74863861
CTCATAA10457.234324E-47.6374141
Produced by FastQC (version 0.11.5)