FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2196745
Sequences flagged as poor quality0
Sequence length100-151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACACT8500.0079401047.64603141
CACACAT11350.00183225576.99857041
CCTCGAT13850.00212224066.25668051
CTTAAAA47001.8189894E-125.5311721
CCTTGAT24851.3924109E-55.5212791
CTCCAAA25251.8187098E-55.43381361
GTTCTGT20509.7451004E-45.2838431
CACATCA17850.00618413145.24695543
CTTCGAT19350.00271100135.22467851
CCACAAA20800.00118289015.20763351
CCACATC19450.00297523085.18597562
CAAGATC19750.00350052515.11886171
CCATTTA25401.2008136E-45.10425334
Produced by FastQC (version 0.11.5)