FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589180
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTGAAT4955.3885473E-513.1674541
AGATTGC5600.002453679210.2246886
CTTCAAT9250.00188116147.8292971
CTTCAAC9400.00220347557.70436141
CTCTTTT11853.474439E-47.3337721
CTTCATT10150.00466682587.1350731
ATTTCTG10150.0052333357.05150946
TTTGATT10750.0091155916.65850162
CCCCCCC3300.00153470065.9023547130-134
Produced by FastQC (version 0.11.5)