FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1283363
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTGT3350.00996953112.9440761
GTTTCGA11402.5514872E-58.2414411
TCAGGCT10250.00549882057.0170489
TCAGGGA10800.00907934556.66255432
CTTCTGG15550.00115797746.0419561
CTTCAGC18050.00111576055.60551361
GTTGAAA18550.00157657655.4544221
CTTCAAG17500.00471917075.36870961
CTTCGGG18000.0065681725.21957871
Produced by FastQC (version 0.11.5)