FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences762063
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGCTAC3650.001128724213.8088925
CTTAAAC4503.4562073E-412.9210091
CTTCGAT7500.00242265978.7216821
ATAGATT7950.0044644838.15134052
CTTGCAA9300.00191660997.81512641
CTTCAAG10100.004299047.1961061
CTTTTAC12150.00349693336.5801431
CTTTGCA15200.00556205775.73794841
AGATTTT16600.00263718665.63882884
AAACAAA19705.219445E-45.53406141
CAAAAAA21600.00178567775.0472691
Produced by FastQC (version 0.11.5)