FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1668719
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGAT8508.0859073E-48.5293141
CTCATAG12205.726691E-57.7253221
CTCTATT11502.4376743E-47.56513171
CTTGAAT16659.20827E-77.4023181
CTCTGTT16204.839385E-67.1604131
CCCCAAA10450.00614221866.937721
CTCTGAT13902.863157E-46.7804981
CTTCGCT12700.00570779256.2794561
AACGATT15108.074015E-46.22593552
TTGAATC15259.096357E-46.16469672
CTTCAAA30852.388333E-96.11014131
CTTGTAT15550.00111561566.06102471
CCAAAGA21608.157545E-66.0415981
CTCATCT17507.2355394E-45.79993341
CTCTGCA17758.669278E-45.7182441
CCCTGTT15300.00616101185.686211
CTCTTCG15650.00790885.5590421
ACTTTGC17100.0035733935.49709756
TCAATTT24052.745739E-45.11193233
Produced by FastQC (version 0.11.5)