FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1768164
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCTTAT13201.7791534E-57.7048241
ACAATGT17151.5408605E-67.16516973
CCCATCT12204.975309E-47.1098943
CTCGGCC13200.0083435846.05379061
CCACGAT13200.0083435846.05379061
GATCTTG15950.00156840545.8913135
CTTGAAT18502.2487505E-45.89017441
CTTTTAA27804.148169E-75.74892331
CGAAGAT19750.00345633535.12392333
CGACAAG18650.0093610225.06376031
CTTAAAA25951.4680099E-45.03899341
CGGAGAT20200.00429956065.0348361
AAATTTA27457.1324175E-55.00325874
Produced by FastQC (version 0.11.5)